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- Swap `mri` for `citty` and wrap every command handler with `defineCommand` so citty owns parsing, validation, and `--help` output; remove the hand-rolled `mri` parse block from `bin.ts` and simplify `run()` to accept no arguments
- Extract shared global flags (`--dry-run`, `--dangerously-allow-dirty`, `--no-telemetry`) into a new `commands/_args.ts` as `commonArgs` that is spread into each subcommand's `args` definition; introduce a `CliArgs` open-record type for handler signatures
- Migrate `add`/`remove`/`init`/`list`/`search` command signatures from `({ positional, argv: Argv }) => …` to a flat `(args: CliArgs) => …` shape; declare `slot`, `moduleId`, and `name` as `type: "positional"` in their respective `defineCommand` blocks
- Update the `commands.test.ts` helper from `argv(flags)` to `args(flags)` to match the flat citty-parsed shape (named positionals promoted to top-level keys alongside booleans)